On the DVD-release there is an alternate ending, where Wendy is grown up and has a little girl of her own.
On television versions, The Columbia logo opens the film instead of the Universal logo. Universal distributed the film theatrically, however Revolution owns television rights with Sony and Debmar Mercury.
The UK version lacks the head-butt delivered by Hook to Peter Pan in order to secure a "PG" rating. This cut version was used as the basis for the DVD release in all PAL-countries (meaning that only NTSC DVDs feature the uncut version) and the Blu-ray released in UK/Germany/Spain.
German theatrical version was edited (ie. Hook killing various pirates, sight of skeletons, much of Hooks more menacing dialogue, the final fight, the crocodile swallowing Hook) to secure a more commercial "Not under 6" rating. The DVD (rated "Not under 12") includes all these scenes but misses the head-butt due to the use of the cut UK PAL-master (see above).
The US VHS version clips the scene where John and Michael are hanging upside-down, so their buttocks aren't seen. The DVD retains it.