In the TV-aired version of the episode "$20.01", Space Ghost asks Mystery Science Theater 3000 creator & former host Joel Hodgson to help him make fun of scenes from the 1960s Japanese television superhero series "Ultra Seven" in the style of MST3K. Possibly because of rights issues, the Ultra Seven clips are replaced on the Volume 2 DVD version with a mock amateur horror film produced by Williams Street. However, the original audio is kept intact.
"Warren" originally aired 36 minutes, before being shortened to 12. However, the original cut is available on the "SGC2C: The 1998 Episodes" DVD.
"Snatch" originally ended with a scene advertising an eBay auction for an alternate ending for the episode. This was later changed to an animated sign saying "HE ENDT", before rearranging itself to "THE END". In addition, the "SGC2C: From the Kentucky Nightmare DVD" DVD version has music for this scene.
"Fire Ant" originally aired with a scene showing space ghost following the ant that ran 10 minutes. It was later replaced with a title card. The original is on the "SGC2C: From The Kentucky Nightmare DVD" 2-disc DVD set.
While certain episodes on the first five DVDs have scenes cut out because of rights issues, other episodes feature scenes present when they originally aired on Cartoon Network but not when aired on Adult Swim.